生化網(wǎng)絡(luò)數(shù)據(jù)服務(wù)系統(tǒng)的設(shè)計(jì)與實(shí)現(xiàn).pdf

1、中國(guó)科學(xué)技術(shù)大學(xué)碩士學(xué)位論文生化網(wǎng)絡(luò)數(shù)據(jù)服務(wù)系統(tǒng)的設(shè)計(jì)與實(shí)現(xiàn)姓名：王強(qiáng)申請(qǐng)學(xué)位級(jí)別：碩士專業(yè)：計(jì)算機(jī)應(yīng)用技術(shù)指導(dǎo)教師：岳麗華20050501璺型堂塾查叁堂嬰主堂!!絲蘭壘墜竺!t_ABSTRACTTherapiddevelopmentsoftechnologiesinbiologyespeciallyinmolecularbiologymaketOffSofbiologicaldata，whichrequestmorepowerfulc

2、omputersandsoftwaretoolsThisdissertationmakesasystematicandthoroughstudyonseveralkeyissuesonbiologicalSOftwaredevelopmentManysoftwaretoolsdevelopedforspecialpurposes，butfewofthemarcreusableandextensible，andworktogethersm

3、oothlyandintegrativelyTherefore，wedesignaJ2EE。basedplatformtosupportbioinfonnaticsresearchInheritedfromJ2EEarchitecture，thisplatformisreusableandextensibleTheplatformneedsatheoreticalmodelsupportInthepaststudies，manydata

4、modelareproposedtoinvestigatethebiomolecularinteractionsMostofthemusethemethodsofgraphtheory：WeintroducethePetrinet，awidelyusedmodelingtoolfordiscreteeventsTheextendedPetfinetcanwelldescribethedynamicalbehaviorofbiochemi

5、calnetworks，especiallyofmetabolicnetworksAndwedevelopagraphicaleditorbasedonthismodelingsystemAsakeymodule，thedatabaseiswelldiscussedanddesigned，Presentlymanydatabasesaboutbiochemicalnetworksaledevelopedwithdifferentfocu

6、sesWedetailedlyinvestigatetheapplicationsandresearches0npathwaydatabases，thesourcesofpathwaydataandtechnologiesusedbythosedatabasesOurdatabaserecruitsPostgreSQLastheDBMS，Hibernateasobjectrelationmappingmodule，BioCycasdat

7、aSOUreesFinallyweemphasizethekeyroleofthevisualizationofbiochemicalnetworksplayedinsystemsbiologyresearchesWecomparemanydescribingmethodsofbiochemicalnetworks，andindicatetheimportanceofthevisualizationAnSVGbasedvisualiza

8、tionframeworkiSdevelopedtosupportthevisualizationoflargenetworksComparedwithpreviousresearches，thenewcontributionsofthepaperare：(1)Fromtheviewpointofsottwareintegration，designsaplatformbasedonJ2EE，whichiSreusableandexten

9、sibler2、JntroducesPetfinetasthedatamodelof’biochemicaInetworks，whichmeetstheneedofthemodelingofcellulardynamicsverywell，Wealsodevelopagraphicaltooltosupportmodeledit(3)Designsanewbiochemicaldatabase(4)Presentsavisualizat